Wimley Lecture 2 - Structure Prediction and Proteomics
All of the Important Links:
GenBank
NCBI – National Center for
Biotechnology Information
http://www.ncbi.nlm.nih.gov
Protein Databases:
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein
TrEMBL/SwissProt:
Swiss Institute of Bioinformatics
ExPASy (Expert Protein Analysis System) web site
http://www.expasy.ch/
then click on SwissProt/TrEMBL
TrEMBL is “computer annotated”
SwissProt is “curated” or
“human annotated”
PIR: Protein Information Resource at Georgetown University:
http://www-nbrf.georgetown.edu/pirwww/
Protein Data Bank (PDB)
Research Collaboratory for
Structural Bioinformatics (Rutgers)
http://www.rcsb.org/pdb/
Freeware Protein Structure
Viewer:
Swiss PDB Viewer:
http://www.expasy.ch/spdbv/
MANY Protein Analysis, Proteomics
Tools can be found at:
http://us.expasy.org/tools/
http://maple.bioc.columbia.edu/
Pfam – Protein Families and Conserved Domains
CDD-Conserved Domain Database